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Diffstat (limited to 'include/compression/bwt.h')
| -rw-r--r-- | include/compression/bwt.h | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/include/compression/bwt.h b/include/compression/bwt.h new file mode 100644 index 0000000..e95f7ee --- /dev/null +++ b/include/compression/bwt.h @@ -0,0 +1,28 @@ +/* This code is part of the tng compression routines. + * + * Written by Daniel Spangberg + * Copyright (c) 2010, 2013, The GROMACS development team. + * + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU Lesser General Public License + * as published by the Free Software Foundation; either version 2.1 + * of the License, or (at your option) any later version. + */ + + +#ifndef BWT_H +#define BWT_H + +void Ptngc_comp_to_bwt(unsigned int *vals, int nvals, + unsigned int *output, int *index); + +void Ptngc_comp_from_bwt(unsigned int *input, int nvals, int index, + unsigned int *vals); + +void Ptngc_bwt_merge_sort_inner(int *indices, int nvals,unsigned int *vals, + int start, int end, + unsigned int *nrepeat, + int *workarray); + +#endif |