Open files in binary mode to fix bug on Windows.

On e.g. Linux it does not make a difference if a file is
opened in binary mode or not, but apparently it does in
Windows. This fixes the crashes noticed before.

Warnings from MSVC fixed as well.

Change-Id: I23dc209211b5462e6989ee550e78e36d7bb181ab

1 files changed, 28 insertions, 28 deletions

diff --git a/include/tng_io.h b/include/tng_io.h
index 1118b15..45cb1d8 100644
--- a/include/tng_io.h
+++ b/include/tng_io.h
@@ -669,7 +669,7 @@ tng_function_status DECLSPECDLLEXPORT tng_output_append_file_set
  * could not be retrieved.
  */
 tng_function_status DECLSPECDLLEXPORT tng_output_file_endianness_get
-                (tng_trajectory_t tng_data, tng_file_endianness *endianness);
+                (const tng_trajectory_t tng_data, tng_file_endianness *endianness);
 
 /**
  * @brief Set the endianness of the output file.
@@ -1294,7 +1294,7 @@ tng_function_status DECLSPECDLLEXPORT tng_num_frame_sets_get
  * @return TNG_SUCCESS (0) if successful.
  */
 tng_function_status DECLSPECDLLEXPORT tng_current_frame_set_get
-                (tng_trajectory_t tng_data,
+                (const tng_trajectory_t tng_data,
                  tng_trajectory_frame_set_t *frame_set_p);
 
 /**
@@ -1527,8 +1527,8 @@ tng_function_status DECLSPECDLLEXPORT tng_molecule_name_set
  * has occurred or TNG_CRITICAL (2) if a major error has occured.
  */
 tng_function_status DECLSPECDLLEXPORT tng_molecule_cnt_get
-                (tng_trajectory_t tng_data,
-                 tng_molecule_t molecule,
+                (const tng_trajectory_t tng_data,
+                 const tng_molecule_t molecule,
                  int64_t *cnt);
 
 /**
@@ -1612,8 +1612,8 @@ tng_function_status DECLSPECDLLEXPORT tng_molecule_system_copy(tng_trajectory_t
  * @return TNG_SUCCESS (0) if successful.
  */
 tng_function_status DECLSPECDLLEXPORT tng_molecule_num_chains_get
-                (tng_trajectory_t tng_data,
-                 tng_molecule_t molecule,
+                (const tng_trajectory_t tng_data,
+                 const tng_molecule_t molecule,
                  int64_t *n);
 
 /**
@@ -1644,8 +1644,8 @@ tng_function_status DECLSPECDLLEXPORT tng_molecule_chain_of_index_get
  * @return TNG_SUCCESS (0) if successful.
  */
 tng_function_status DECLSPECDLLEXPORT tng_molecule_num_residues_get
-                (tng_trajectory_t tng_data,
-                 tng_molecule_t molecule,
+                (const tng_trajectory_t tng_data,
+                 const tng_molecule_t molecule,
                  int64_t *n);
 
 /**
@@ -1661,9 +1661,9 @@ tng_function_status DECLSPECDLLEXPORT tng_molecule_num_residues_get
  * residue is not found.
  */
 tng_function_status DECLSPECDLLEXPORT tng_molecule_residue_of_index_get
-                (tng_trajectory_t tng_data,
-                 tng_molecule_t molecule,
-                 int64_t index,
+                (const tng_trajectory_t tng_data,
+                 const tng_molecule_t molecule,
+                 const int64_t index,
                  tng_residue_t *residue);
 
 /**
@@ -1676,8 +1676,8 @@ tng_function_status DECLSPECDLLEXPORT tng_molecule_residue_of_index_get
  * @return TNG_SUCCESS (0) if successful.
  */
 tng_function_status DECLSPECDLLEXPORT tng_molecule_num_atoms_get
-                (tng_trajectory_t tng_data,
-                 tng_molecule_t molecule,
+                (const tng_trajectory_t tng_data,
+                 const tng_molecule_t molecule,
                  int64_t *n);
 
 /**
@@ -1693,9 +1693,9 @@ tng_function_status DECLSPECDLLEXPORT tng_molecule_num_atoms_get
  * atom is not found.
  */
 tng_function_status DECLSPECDLLEXPORT tng_molecule_atom_of_index_get
-                (tng_trajectory_t tng_data,
-                 tng_molecule_t molecule,
-                 int64_t index,
+                (const tng_trajectory_t tng_data,
+                 const tng_molecule_t molecule,
+                 const int64_t index,
                  tng_atom_t *atom);
 
 /**
@@ -1867,9 +1867,9 @@ tng_function_status DECLSPECDLLEXPORT tng_chain_num_residues_get
  * residue is not found.
  */
 tng_function_status DECLSPECDLLEXPORT tng_chain_residue_of_index_get
-                (tng_trajectory_t tng_data,
-                 tng_chain_t chain,
-                 int64_t index,
+                (const tng_trajectory_t tng_data,
+                 const tng_chain_t chain,
+                 const int64_t index,
                  tng_residue_t *residue);
 
 /**
@@ -1999,9 +1999,9 @@ tng_function_status DECLSPECDLLEXPORT tng_residue_num_atoms_get
  * atom is not found.
  */
 tng_function_status DECLSPECDLLEXPORT tng_residue_atom_of_index_get
-                (tng_trajectory_t tng_data,
-                 tng_residue_t residue,
-                 int64_t index,
+                (const tng_trajectory_t tng_data,
+                 const tng_residue_t residue,
+                 const int64_t index,
                  tng_atom_t *atom);
 
 /**
@@ -2060,7 +2060,7 @@ tng_function_status DECLSPECDLLEXPORT tng_residue_atom_w_id_add
  * @pre \code atom != 0 \endcode The atom must not be NULL.
  * @return TNG_SUCCESS (0) if successful.
  */
-tng_function_status tng_atom_residue_get(tng_trajectory_t tng_data,
+tng_function_status tng_atom_residue_get(const tng_trajectory_t tng_data,
                                          const tng_atom_t atom,
                                          tng_residue_t *residue);
 
@@ -2611,7 +2611,7 @@ tng_function_status DECLSPECDLLEXPORT tng_frame_set_first_frame_time_set
  * frame set or TNG_CRITICAL(2) if a major error has occured.
  */
 tng_function_status DECLSPECDLLEXPORT tng_first_frame_nr_of_next_frame_set_get
-                (tng_trajectory_t tng_data,
+                (const tng_trajectory_t tng_data,
                  int64_t *frame);
 
 /**
@@ -2736,7 +2736,7 @@ tng_function_status DECLSPECDLLEXPORT tng_data_block_name_get
  * TNG_CRITICAL (2) if a major error has occured.
  */
 tng_function_status DECLSPECDLLEXPORT tng_data_block_dependency_get
-                (tng_trajectory_t tng_data,
+                (const tng_trajectory_t tng_data,
                  int64_t block_id,
                  int *block_dependency);
 
@@ -2753,7 +2753,7 @@ tng_function_status DECLSPECDLLEXPORT tng_data_block_dependency_get
  * TNG_CRITICAL (2) if a major error has occured.
  */
 tng_function_status DECLSPECDLLEXPORT tng_data_block_num_values_per_frame_get
-                (tng_trajectory_t tng_data,
+                (const tng_trajectory_t tng_data,
                  int64_t block_id,
                  int64_t *n_values_per_frame);
 
@@ -3229,7 +3229,7 @@ tng_function_status DECLSPECDLLEXPORT tng_particle_data_vector_interval_get
  * has occurred or TNG_CRITICAL (2) if a major error has occured.
  */
 tng_function_status DECLSPECDLLEXPORT tng_data_get_stride_length
-                (tng_trajectory_t tng_data,
+                (const tng_trajectory_t tng_data,
                  const int64_t block_id,
                  int64_t frame,
                  int64_t *stride_length);
@@ -4681,7 +4681,7 @@ tng_function_status DECLSPECDLLEXPORT tng_util_box_shape_with_time_double_write
 tng_function_status DECLSPECDLLEXPORT tng_util_frame_current_compression_get
                 (tng_trajectory_t tng_data,
                  const int64_t block_id,
-                 char *codec_id,
+                 int64_t *codec_id,
                  float *factor);
 
 /** @brief High-level function for determining the next frame with data and what