Merge branch 'master' of git.gromacs.org:tng

1 files changed, 28 insertions, 0 deletions

diff --git a/include/compression/bwt.h b/include/compression/bwt.h
new file mode 100644
index 0000000..e95f7ee
--- /dev/null
+++ b/include/compression/bwt.h
@@ -0,0 +1,28 @@
+/* This code is part of the tng compression routines.
+ *
+ * Written by Daniel Spangberg
+ * Copyright (c) 2010, 2013, The GROMACS development team.
+ *
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU Lesser General Public License
+ * as published by the Free Software Foundation; either version 2.1
+ * of the License, or (at your option) any later version.
+ */
+
+
+#ifndef BWT_H
+#define BWT_H
+
+void Ptngc_comp_to_bwt(unsigned int *vals, int nvals,
+		 unsigned int *output, int *index);
+
+void Ptngc_comp_from_bwt(unsigned int *input, int nvals, int index,
+		   unsigned int *vals);
+
+void Ptngc_bwt_merge_sort_inner(int *indices, int nvals,unsigned int *vals,
+			  int start, int end,
+			  unsigned int *nrepeat,
+			  int *workarray);
+
+#endif