| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2014-06-16 | Migrating data blocks [WIP]. | Magnus Lundborg | |
| Also includes some simple tests to verify that it is working. Change-Id: I6d465000a6fd202d53af033d7e839bfecdccc068 | |||
| 2014-06-16 | Enhancements to CMake usage | Mark Abraham | |
| These changes mostly address being able to use fully-constructed source-file targets in GROMACS, e.g. to construct an object library. Thus compilation properties are moved onto the source files, rather than the library into which they are linked. Removed unnecessary library properties Made it easier to handle lists of source files in non-repetitious ways. Change-Id: I01a4a56ba8a8d45ba02d95d08c948b9ca5015013 | |||
| 2014-06-16 | Added project and API versions to CMakeLists.txt. | Rossen Apostolov | |
| TNG_VERSION was renamed to TNG_API_VERSION which is configured through API_VERSION in CMakeLists.txt. Updated the header to 2014. Change-Id: I6a37825cd1d236927ac0e21a797abc4e98f7ce59 | |||
| 2014-06-16 | Install TNG documentation. | Rossen Apostolov | |
| Change-Id: Ie0b0edaa1527c4f2a6e74485a055e7a771d1d50b | |||
| 2014-06-11 | Check to ensure not reading past end of file. | Magnus Lundborg | |
| Also do not check what data blocks are present if that has already been done. Change-Id: Idda85c94c0fbaa1ae08cb358cf5d062aa125c391 | |||
| 2014-05-28 | Reread frame set after getting stride length. | Magnus Lundborg | |
| After determining the stride length reread the current frame set so that no data is skipped when reading a file. Change-Id: I99c36b0cefe918ea39f22a559553d65b9a72a48f | |||
| 2014-05-28 | Handle one frame frame sets when reading data. | Magnus Lundborg | |
| Do not use the stride length if the frame set only contains one frame. Change-Id: I2fc98f6f405385dcf12c1da8a946cf0ad99a6ff7 | |||
| 2014-05-28 | More work with migrating data blocks. WIP. | Magnus Lundborg | |
| Change-Id: I0ac8bce978e28b77b7795a0747b66bb72ea7f1de | |||
| 2014-05-05 | Check if number of written frames should be updated. | Magnus Lundborg | |
| When reading a frame set the number of written frames in the frame set should only be updated if the output file and the input files are the same. This fixes a bug in one of the tests in tng_testing. Change-Id: Ia21d501b9723f756dfccf75e5d5bbac606cdc582 | |||
| 2014-04-15 | Improved adding to, and finding in, molecule system | Magnus Lundborg | |
| When adding molecules, chains, residues atoms set the ID to the last ID+1. When searching in the molecule system do a reverse search since it is often the last added item that is searched for. Change-Id: I293d95284405e517e05a33ad529c05359d953a7d | |||
| 2014-04-14 | Functions for migrating data blocks. "Unreversed" for loops. | Magnus Lundborg | |
| The functions for migrating data blocks are still not in use - WIP. Reversed for loops were "unreversed" for improved readability. The speed difference should not be noticable anyhow. Change-Id: I084871a62bb279e648ef790218c52ea19faa72a3 | |||
| 2014-03-11 | Install tng_io_fwd.h as well when installing. | Magnus Lundborg | |
| Change-Id: I851e6b1ac6a1f5bd70ff3aa7c1575f8198dc0177 | |||
| 2014-03-04 | Updated path to tng header files. | Magnus Lundborg | |
| Change-Id: I8793ad7c3da4cc40c919167dbf3ce5a9ac3ce27e | |||
| 2014-03-01 | Modify the option to specify if ZLIB should be used. | Magnus Lundborg | |
| In GROMACS there is an extra check to see that ZLIB can actually be linked against. This change uses those options properly. Change-Id: I910be0cf81a47c9feea2d3494925cc4a3c82dc4b | |||
| 2014-02-19 | Fixed some warnings about uninitialized variables. | Magnus Lundborg | |
| Change-Id: I6fa7b9ea5d4be21112d4ec3f01417128c1a87a72 | |||
| 2014-02-13 | Improved compiler checks for setting warning flags. | Magnus Lundborg | |
| Change-Id: I567e237357b5292378e892d64a25af312492713f | |||
| 2014-02-12 | Remove OpenMP option. | Magnus Lundborg | |
| It was only used for building some of the examples. Now, those example are only built if OpenMP is found. Change-Id: I816a52595fb00bb729adce83477f8e2f35dd6761 | |||
| 2014-02-11 | Fixed some clang warnings. | Magnus Lundborg | |
| Change-Id: I7463cab38975107cfff102434c525233ed996563 | |||
| 2014-02-11 | Open files in binary mode to fix bug on Windows. | Magnus Lundborg | |
| On e.g. Linux it does not make a difference if a file is opened in binary mode or not, but apparently it does in Windows. This fixes the crashes noticed before. Warnings from MSVC fixed as well. Change-Id: I23dc209211b5462e6989ee550e78e36d7bb181ab | |||
| 2014-02-04 | Revert "Test gerrit." | Rossen Apostolov | |
| This reverts commit 06fdeeb20bbe66e23fe618af5ef50627e5d0ba71. | |||
| 2014-02-04 | Test gerrit. | Rossen Apostolov | |
| Change-Id: I9aca165530e9e0631fde5872282d0d3a09af89db | |||
| 2014-02-04 | Cleaned up unused and non-portable /tmp invocations. | Rossen Apostolov | |
| 2014-01-21 | Updated change log. | Magnus Lundborg | |
| 2014-01-21 | Bump version number. Added changes to change log. | Magnus Lundborg | |
| 2014-01-21 | Make finding zlib fail quietly. | Magnus Lundborg | |
| 2014-01-14 | More improvements to reading next frame. | Magnus Lundborg | |
| 2014-01-14 | Improved reading next frame. | Magnus Lundborg | |
| 2014-01-14 | One more include path fixed. | Magnus Lundborg | |
| 2014-01-14 | Use relative paths for includes. | Magnus Lundborg | |
| 2014-01-13 | Fixed some warnings. Still needs to fix tng_particle_data_values_free() and ↵ | Magnus Lundborg | |
| tng_data_values_free() | |||
| 2014-01-13 | Some fixes in tng_trajectory_init_from_src() | Magnus Lundborg | |
| 2014-01-13 | Reset current frame set file pos after counting frame sets. | Magnus Lundborg | |
| 2014-01-13 | Fix to last commit. | Magnus Lundborg | |
| 2014-01-13 | Reset the current frame set after counting the number of frame sets. | Magnus Lundborg | |
| 2014-01-13 | New static function for reading data block meta data. | Magnus Lundborg | |
| 2014-01-10 | Fixed bug in name comparisons. | Magnus Lundborg | |
| Added function to get residue of atom. | |||
| 2014-01-10 | Do not automatically clear particle mappings when adding new frame set. | Magnus Lundborg | |
| Make tng_frame_set_particle_mappings_free() public. | |||
| 2014-01-08 | Further improvements on implicit particles. | Magnus Lundborg | |
| 2014-01-08 | Improved molecule handling (set num particles and num impl particles). | Magnus Lundborg | |
| 2014-01-08 | More fixes to avoid redefinition of PRId64. | Magnus Lundborg | |
| 2014-01-08 | Better handling of inttypes.h | Magnus Lundborg | |
| 2014-01-08 | Added newline at end of file. | Magnus Lundborg | |
| 2014-01-08 | Better checks around the typedefs to avoid redefinitions. | Magnus Lundborg | |
| 2014-01-08 | Do forward declarations in separate header file. | Magnus Lundborg | |
| Also fixed some cmake warnings. | |||
| 2013-12-17 | Fixes to determine if writing first frame of data in frame set. | Magnus Lundborg | |
| 2013-12-17 | Remove error message when not finding data block. | Magnus Lundborg | |
| 2013-12-16 | Remove some unused variables. | Magnus Lundborg | |
| 2013-12-16 | Copy example_files dir to the bin/tests directory. | Magnus Lundborg | |
| 2013-12-13 | Direct output to stderr. | Magnus Lundborg | |
| 2013-12-13 | Fixed bug when reading next frame. | Magnus Lundborg | |
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index : tng | |
| TNG fork to include HRTC | root |
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