/* Copyright 2014-2016 Jan Huwald, Stephan Richter This file is part of HRTC. HRTC is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. HRTC is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program (see file LICENSE). If not, see . */ #pragma once #include #include bool readAll(int fd, char *buf, size_t size) { size_t cur = 0; while (cur < size) { auto ret = read(fd, buf+cur, size-cur); assert(ret >= 0); // catch FS errors if (ret ==0) // EOF return false; cur += ret; } return true; } template /* read binary format data file, which contains trajectories followed by velocities and ??? */ bool readHubin(Real* targetBuffer, uint64_t numberOfTrajectories, int sourceFileHandle) { uint32_t size = numberOfTrajectories * sizeof(Real); static Real *trash = new Real[2*size]; // read payload (coordinates) return (readAll(sourceFileHandle, (char*) targetBuffer, size) && read(sourceFileHandle, trash, 2*size)); } template bool readTSV(Real* targetBuffer, uint64_t numberOfTrjectories, int sourceFileHandle) { const int bufSz = 65536; static char *buf = (char*) malloc(bufSz); static int bufPos = 0, bufMax = 0; char numBuf[32], c; int numPos(0); int ret; uint64_t traj(0); for (;;) { // refill buffers if empty if (bufPos == bufMax) { ret = read(sourceFileHandle, buf, bufSz); if (ret == 0) return false; // end of stream if (ret < 0) { perror("while reading from input stream: "); exit(EXIT_FAILURE); } bufPos = 0; bufMax = ret; } // read one char, interpret it c = *(buf + bufPos++); switch (c) { case '\n': case '\t': // completed reading number numBuf[numPos] = 0; char *endp; targetBuffer[traj] = strtod((char*) numBuf, &endp); // convert number digits to atcual number assert(*endp == 0); numPos = 0; if (++traj == numberOfTrjectories) return c == '\n'; // after reading values, we should find a line break. otherwise something is weird. break; default: // append digit to number numBuf[numPos] = c; assert(++numPos < 32); } } return false; } template function readTest(uint blockSize) { return [=] (Real* dstBuf, uint64_t numTraj, int) -> bool { static Real* srcBuf = nullptr; static int cur = 0; static int total = 0; if (!srcBuf) { srcBuf = (Real*) malloc(sizeof(Real) * numTraj * blockSize); assert(srcBuf); for (size_t i = 0; i